Molecular Imaging Instrumentation Laboratory  

Jing-yu Cui

Jing-yu Cui

Phone: 650-736-2780 Fax: 650-736-0234 E-mail »

Jing-yu is interested in high performance parallel computing, especially GPU based techniques for parallel PET image reconstruction. He is also interested in statistical machine learning methods for medical image reconstruction and analysis.

Publications




Education

  • M.S. in Automation, Tsinghua University, 2008
  • B.E. in Automation, Tsinghua University, 2005

Honors and Awards

  • 2008 Engineering Fellowship - Stanford University
  • 2008 Honor of Outstanding Master Graduate Student - Tsinghua University
  • 2008 Honor of Outstanding Master Thesis - Tsinghua University
  • 2007 Honor of Best Intern - Microsoft
  • 2005 University President Scholarship - Tsinghua University

Projects

Publications

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    Author Title Year Jour./Proc./Book
    Aghajan, Y.; Lacroix, J.; Cui, J.; van Halteren, A. & Aghajan, H. Home Exercise in a Social Context: Real-Time Experience Sharing Using Avatars 2009 The 3rd International Conference on Intelligent Technologies for Interactive Entertainment (INTETAIN 2009)  
    BibTeX:
    @inproceedings{Aghajan2009,
      author = {Yasmin Aghajan and Joyca Lacroix and J. Cui and Aart van Halteren and Hamid Aghajan},
      title = {Home Exercise in a Social Context: Real-Time Experience Sharing Using Avatars},
      booktitle = {The 3rd International Conference on Intelligent Technologies for Interactive Entertainment (INTETAIN 2009)},
      year = {2009}
    }
    					
    Cui, J.; Aghajan, Y.; Lacroix, J.; van Halteren, A. & Aghajan, H. Home Exercise in a Social Context: Real-Time Experience Sharing using Avatars 2009 Entertainment Computing
    Vol. In Press, Accepted Manuscript, pp. -  
    BibTeX:
    @article{Cui2009,
      author = {J. Cui and Yasmin Aghajan and Joyca Lacroix and Aart van Halteren and Hamid Aghajan},
      title = {Home Exercise in a Social Context: Real-Time Experience Sharing using Avatars},
      journal = {Entertainment Computing},
      year = {2009},
      volume = {In Press, Accepted Manuscript},
      pages = { - },
      doi = {DOI: 10.1016/j.entcom.2009.09.003}
    }
    					
    Cui, J.; Chinn, G. & Levin, C.S. Fast and Accurate 3D Compton Cone Projections on GPU Using CUDA 2011 IEEE 2011 Nuclear Science Symposium and Medical Imaging Conference  
    BibTeX:
    @conference{jingyucui2011c,
      author = {Jingyu Cui and Garry Chinn and Craig S. Levin},
      title = {Fast and Accurate 3D Compton Cone Projections on GPU Using CUDA},
      booktitle = {IEEE 2011 Nuclear Science Symposium and Medical Imaging Conference},
      year = {2011}
    }
    					
    Cui, J.; Mathur, S.; Covell, M.; Kwatra, V. & Han, M. Example-based Image Compression 2010 The International Conference on Image Processing (ICIP)  
    BibTeX:
    @inproceedings{Cui2010,
      author = {J. Cui and Saurabh Mathur and Michele Covell and Vivek Kwatra and Mei Han},
      title = {Example-based Image Compression},
      booktitle = {The International Conference on Image Processing (ICIP)},
      year = {2010}
    }
    					
    Cui, J.; Pratx, G.; Prevrhal, S. & Levin, C.S. Fully 3D List-Mode Time-of-Flight PET Image Reconstruction on GPUs Using CUDA 2011 Medical Physics
    Vol. 38, pp. 6775-6786  
    BibTeX:
    @article{Cui2011CUDA,
      author = {J. Cui and G. Pratx and S. Prevrhal and C. S. Levin},
      title = {Fully 3D List-Mode Time-of-Flight PET Image Reconstruction on GPUs Using CUDA},
      journal = {Medical Physics},
      year = {2011},
      volume = {38},
      number = {12},
      pages = {6775-6786}
    }
    					
    Cui, J.; Pratx, G.; Prevrhal, S.; Shao, L. & Levin, C.S. Fully 3-D Time-of-Flight Positron Emission Tomography Image Reconstruction from List-mode Data Using GPUs and CUDA 2010 IEEE 2010 Nuclear Science Symposium and Medical Imaging Conference (IEEE NSS/MIC 2010)  
    BibTeX:
    @inproceedings{Cui2010b,
      author = {J. Cui and G. Pratx and S. Prevrhal and L. Shao and C. S. Levin},
      title = {Fully 3-D Time-of-Flight Positron Emission Tomography Image Reconstruction from List-mode Data Using GPUs and CUDA},
      booktitle = {IEEE 2010 Nuclear Science Symposium and Medical Imaging Conference (IEEE NSS/MIC 2010)},
      year = {2010}
    }
    					
    Cui, J.; Pratx, G.; Prevrhal, S.; Shao, L. & Levin, C.S. Highly Parallel Image Reconstruction for Positron Emission Tomography (PET) 2010 2010 GPU Technology Conference (GTC 2010)  
    BibTeX:
    @inproceedings{Cui2010c,
      author = {J. Cui and G. Pratx and S. Prevrhal and L. Shao and C. S. Levin},
      title = {Highly Parallel Image Reconstruction for Positron Emission Tomography (PET)},
      booktitle = {2010 GPU Technology Conference (GTC 2010)},
      year = {2010}
    }
    					
    Cui, J.; Pratx, G.; Prevrhal, S.; Zhang, B.; Shao, L. & Levin, C.S. Measurement-Based Spatially-Varying Point Spread Function for List-Mode PET Reconstruction on GPU 2011 IEEE 2011 Nuclear Science Symposium and Medical Imaging Conference  
    BibTeX:
    @conference{jingyucui2011b,
      author = {Jingyu Cui and Guillem Pratx and Sven Prevrhal and Bin Zhang and Lingxiong Shao and Craig S. Levin},
      title = {Measurement-Based Spatially-Varying Point Spread Function for List-Mode PET Reconstruction on GPU},
      booktitle = {IEEE 2011 Nuclear Science Symposium and Medical Imaging Conference},
      year = {2011}
    }
    					
    Cui, J.; Prevrhal, S.; Pratx, G.; Shao, L. & Levin, C.S. Fully 3-D List-mode Positron Emission Tomography Image Reconstruction on a Multi-GPU Cluster 2011 11th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine (Fully3D 2011)  
    BibTeX:
    @inproceedings{Cui2011,
      author = {J. Cui and S. Prevrhal and G. Pratx and L. Shao and C. S. Levin},
      title = {Fully 3-D List-mode Positron Emission Tomography Image Reconstruction on a Multi-GPU Cluster},
      booktitle = {11th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine (Fully3D 2011)},
      year = {2011}
    }
    					
    Cui, J.; Wen, F. & Tang, X. User Intention Modeling for Interactive Image Retrieval 2010 IEEE International Conference on Multimedia & Expo, International Workshop on Visual Content Identification and Search (VCIDS)  
    BibTeX:
    @inproceedings{Cui2010a,
      author = {J. Cui and Fang Wen and Xiaoou Tang},
      title = {User Intention Modeling for Interactive Image Retrieval},
      booktitle = {IEEE International Conference on Multimedia & Expo, International Workshop on Visual Content Identification and Search (VCIDS)},
      year = {2010}
    }
    					
    Cui, J.; Wen, F. & Tang, X. Real Time Google and Live Image Search Re-ranking 2008 MULTIMEDIA '08: Proceedings of the 16th international conference on Multimedia  
    BibTeX:
    @inproceedings{Cui2008a,
      author = {J. Cui and Fang Wen and Xiaoou Tang},
      title = {Real Time Google and Live Image Search Re-ranking},
      booktitle = {MULTIMEDIA '08: Proceedings of the 16th international conference on Multimedia},
      publisher = {ACM},
      year = {2008}
    }
    					
    Cui, J.; Wen, F. & Tang, X. IntentSearch: Interactive On-line Image Search Re-ranking 2008 MULTIMEDIA '08: Proceedings of the 16th international conference on Multimedia  
    BibTeX:
    @inproceedings{Cui2008b,
      author = {J. Cui and Fang Wen and Xiaoou Tang},
      title = {IntentSearch: Interactive On-line Image Search Re-ranking},
      booktitle = {MULTIMEDIA '08: Proceedings of the 16th international conference on Multimedia},
      publisher = {ACM},
      year = {2008}
    }
    					
    Cui, J.; Wen, F.; Xiao, R.; Tian, Y. & Tang, X. EasyAlbum: an interactive photo annotation system based on face clustering and re-ranking 2007 CHI '07: Proceedings of the SIGCHI conference on Human factors in computing systems, pp. 367-376  
    BibTeX:
    @inproceedings{Cui2007,
      author = {J. Cui and Fang Wen and Rong Xiao and Yuandong Tian and Xiaoou Tang},
      title = {EasyAlbum: an interactive photo annotation system based on face clustering and re-ranking},
      booktitle = {CHI '07: Proceedings of the SIGCHI conference on Human factors in computing systems},
      publisher = {ACM},
      year = {2007},
      pages = {367--376},
      doi = {http://doi.acm.org/10.1145/1240624.1240684}
    }
    					
    Cui, J.; Yang, Q.; Wen, F.; Wu, Q.; Zhang, C.; Cool, L.V. & Tang, X. Transductive Object Cutout 2008 CVPR '08: Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'08)  
    BibTeX:
    @inproceedings{Cui2008,
      author = {J. Cui and Qiong Yang and Fang Wen and Qiying Wu and Changshui Zhang and Luc Van Cool and Xiaoou Tang},
      title = {Transductive Object Cutout},
      booktitle = {CVPR '08: Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'08)},
      publisher = {IEEE Computer Society},
      year = {2008}
    }
    					
    Cui, J. & Zhang, C. Towards optimal query design for relevance feedback in image retrieval 2008 Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on , pp. 1225-1228  
    BibTeX:
    @inproceedings{Cui2008c,
      author = {J. Cui and Changshui Zhang},
      title = {Towards optimal query design for relevance feedback in image retrieval},
      journal = {Acoustics, Speech and Signal Processing, 2008. ICASSP 2008. IEEE International Conference on},
      year = {2008},
      pages = {1225-1228},
      doi = {http://dx.doi.org/10.1109/ICASSP.2008.4517837}
    }
    					
    Cui, J. & Zhang, C. Combining stroke-based and selection-based relevance feedback for content-based image retrieval 2007 MULTIMEDIA '07: Proceedings of the 15th international conference on Multimedia, pp. 329-332  
    BibTeX:
    @inproceedings{Cui2007a,
      author = {J. Cui and Changshui Zhang},
      title = {Combining stroke-based and selection-based relevance feedback for content-based image retrieval},
      booktitle = {MULTIMEDIA '07: Proceedings of the 15th international conference on Multimedia},
      publisher = {ACM},
      year = {2007},
      pages = {329--332},
      doi = {http://doi.acm.org/10.1145/1291233.1291304}
    }
    					
    Liu, W.; Qian, B.; Cui, J. & Liu, J. Spectral Kernel Learning for Semi-Supervised Classification 2009 Twenty-first International Joint Conference on Artificial Intelligence (IJCAI-09)  
    BibTeX:
    @inproceedings{Liu2009,
      author = {Wei Liu and Buyue Qian and J. Cui and Jianzhuang Liu},
      title = {Spectral Kernel Learning for Semi-Supervised Classification},
      booktitle = {Twenty-first International Joint Conference on Artificial Intelligence (IJCAI-09)},
      year = {2009}
    }
    					
    Napel, S.; Beaulieu, C.; Faruque, J.; Rodriguez, C.; Korenblum, D.; Cui, J.; Xu, J.; Gupta, A.; Greenspan, H.; Tye, G. & Rubin, D. Content-based Image Retrieval: Portal Venous CT of Liver Lesions 2009 Society for Imaging Informatics in Medicine (SIIM)  
    BibTeX:
    @conference{Napel2009a,
      author = {S. Napel and C.F. Beaulieu and J. Faruque and C. Rodriguez and D. Korenblum and J. Cui and J. Xu and A. Gupta and H. Greenspan and G. Tye and D.L. Rubin},
      title = {Content-based Image Retrieval: Portal Venous CT of Liver Lesions},
      booktitle = {Society for Imaging Informatics in Medicine (SIIM)},
      year = {2009}
    }
    					
    Napel, S.; Beaulieu, C.; Rodriguez, C.; Cui, J.; Xu, J.; Gupta, A.; Korenblum, D.; Greenspan, H.; Ma, Y. & Rubin, D. Automated Retrieval of CT Images of Liver Lesions Based on Image Similarity: Method and Preliminary Results 2009 Radiology  
    BibTeX:
    @article{Napel2009,
      author = {S. Napel and C.F. Beaulieu and C. Rodriguez and J. Cui and J. Xu and A. Gupta and Danny Korenblum and H. Greenspan and Y. Ma and D.L. Rubin},
      title = {Automated Retrieval of CT Images of Liver Lesions Based on Image Similarity: Method and Preliminary Results},
      journal = {Radiology},
      year = {2009}
    }
    					
    Pratx, G.; Cui, J.; Prevrhal, S. & Levin, C.S. 3-D Tomographic Image Reconstruction from Unordered Lines with CUDA. In GPU Computing Gems 2010  
    BibTeX:
    @inbook{Pratx2010,
      author = {G. Pratx and J. Cui and S. Prevrhal and C. S. Levin},
      title = {3-D Tomographic Image Reconstruction from Unordered Lines with CUDA. In GPU Computing Gems},
      publisher = {nVIDIA �CAddison-Wesley},
      year = {2010}
    }
    					
    Pratx, G.; Cui, J.; Prevrhal, S. & Levin, C.S. GPU Computing Gems Emerald Edition 2011 GPU Computing Gems Emerald Edition , pp. 679-691  
    BibTeX:
    @inbook{jingyucui2011,
      author = {Guillem Pratx and Jingyu Cui and Sven Prevrhal and Craig S. Levin},
      title = {GPU Computing Gems Emerald Edition},
      publisher = {Morgan Kaufmann},
      year = {2011},
      pages = {679--691}
    }
    					
    Prevrhal, S. & Cui, J. Modern architecture for massively parallel medical tomographic image reconstruction on a GPU cluster 2010 2010 GPU Technology Conference (GTC 2010)  
    BibTeX:
    @inproceedings{Prevrhal2010,
      author = {S. Prevrhal and J. Cui},
      title = {Modern architecture for massively parallel medical tomographic image reconstruction on a GPU cluster},
      booktitle = {2010 GPU Technology Conference (GTC 2010)},
      year = {2010}
    }
    					
    Spanoudaki, V.C.; Cui, J.; Yeom, J. & Levin, C.S. Evaluation of the benefits of depth of interaction compensated time of flight PET 2011 2011 World Molecular Imaging Congress, Submitted  
    BibTeX:
    @conference{Spanoudaki2011,
      author = {V. C. Spanoudaki and J. Cui and J. Yeom and C. S. Levin},
      title = {Evaluation of the benefits of depth of interaction compensated time of flight PET},
      booktitle = {2011 World Molecular Imaging Congress, Submitted},
      year = {2011}
    }
    					

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